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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">foodmeta</journal-id><journal-title-group><journal-title xml:lang="ru">FOOD METAENGINEERING</journal-title><trans-title-group xml:lang="en"><trans-title>FOOD METAENGINEERING</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2949-6497</issn><publisher><publisher-name>All-Russian Dairy Research Institute</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.37442/fme.2025.1.79</article-id><article-id custom-type="elpub" pub-id-type="custom">foodmeta-79</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Оригинальное эмпирическое исследование</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>Original Empirical Research</subject></subj-group></article-categories><title-group><article-title>Биоинформатический анализ изменений пептидного профиля молочных белков при хранении</article-title><trans-title-group xml:lang="en"><trans-title>Bioinformatic Analysis of Changes in the Peptide Profile of Dairy Proteins During Storage</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7529-2007</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Солтан</surname><given-names>Осама И.А.</given-names></name><name name-style="western" xml:lang="en"><surname>Soltan</surname><given-names>Osama I.A.</given-names></name></name-alternatives><email xlink:type="simple">usama.soultan@mu.edu.eg</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Университет Миниа</institution><country>Египет</country></aff><aff xml:lang="en"><institution>Minia University</institution><country>Egypt</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2025</year></pub-date><pub-date pub-type="epub"><day>25</day><month>03</month><year>2025</year></pub-date><volume>3</volume><issue>1</issue><fpage>17</fpage><lpage>32</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Солтан О.И., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Солтан О.И.</copyright-holder><copyright-holder xml:lang="en">Soltan O.I.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.fme-journal.org/jour/article/view/79">https://www.fme-journal.org/jour/article/view/79</self-uri><abstract><sec><title>Введение</title><p>Введение: Ферментативные процессы, происходящие в молочных продуктах при хранении, могут приводить к изменениям белкового состава, что влияет на их качество. Ключевую роль в этих изменениях играют как эндогенные ферменты, такие как плазмин, так и бактериальные протеазы. Применение биоинформатических методов позволяет моделировать гидролиз белков и прогнозировать образование пептидов со специфическими свойствами (с конкретными органолептическими характеристиками, биологической активностью, молекулярной массой, аминокислотной последовательностью и др.).</p></sec><sec><title>Цель</title><p>Цель: Оценить изменения пептидного профиля казеинов β-CN, αs1-CN, αs2-CN и κ-CN при моделировании их гидролиза плазмином и термостабильной бактериальной протеазой Pseudomonas LBSA1.</p></sec><sec><title>Материалы и методы</title><p>Материалы и методы: Анализ последовательностей казеинов проводили с использованием базы данных UniProt. Гидролиз моделировали в BIOPEP-UWM (для плазмина) и с помощью регулярных выражений в RStudio (для Pseudomonas LBSA1). Степень гидролиза (DH) рассчитывали на основе количества разорванных пептидных связей в отношении к общему числу возможных связей в белковой молекуле. Для анализа пептидных последовательностей применяли библиотеку “stringr” в RStudio. Горькие и антиоксидантные пептиды выявляли с использованием базы данных BIOPEP-UWM. Данные о молекулярной массе и изоэлектрической точке полученных пептидов извлекали с помощью библиотеки “Peptides” в RStudio.</p></sec><sec><title>Результаты</title><p>Результаты: Результаты 2D-диаграмм показали различия в распределении пептидов по молекулярной массе и изоэлектрической точке в зависимости от специфичности ферментов. В комбинированной модели гидролиза идентифицировано 4 горьких пептида и 3 вида горьких аминокислот, а также 6 антиоксидантных пептидов.</p></sec><sec><title>Выводы</title><p>Выводы: Биоинформатическое моделирование позволяет прогнозировать ферментативные изменения белков в молочных продуктах, их влияние на качество, а также повышать эффективность проводимых в этом поле экспериментов. Полученные данные могут использоваться для разработки подходов к оценке хранения молочных продуктов и идентификации маркеров качества.</p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Introduction</title><p>Introduction: Enzymatic processes occurring in dairy products during storage can lead to changes in protein composition, affecting products’ quality. Key players in these changes include endogenous enzymes, such as plasmin, and bacterial proteases like the heat stable protease from Pseudomonas LBSA1. The application of bioinformatic methods enables the modeling of protein hydrolysis and prediction of peptide formation with specific properties (e.g., organoleptic characteristics, bioactivity, molecular weight, amino acid sequence).</p></sec><sec><title>Purpose</title><p>Purpose: To evaluate changes in the peptide profiles of β-CN, αs1-CN, αs2-CN, and κ-CN caseins during simulated hydrolysis by plasmin and the heat stable bacterial protease Pseudomonas LBSA1.</p></sec><sec><title>Materials and Methods</title><p>Materials and Methods: Casein sequences were analyzed using the UniProt database. Hydrolysis was modeled using BIOPEP-UWM (for plasmin) and regular expressions in RStudio (for Pseudomonas LBSA1). The degree of hydrolysis (DH) was calculated as the ratio of cleaved peptide bonds to the total possible bonds in the protein. Peptide sequences were analyzed using the “stringr” library in RStudio. Bitter and antioxidant peptides were identified using the BIOPEP-UWM database. Molecular weight and isoelectric point data were obtained via the “Peptides” library in RStudio.</p></sec><sec><title>Results</title><p>Results: 2D diagrams revealed distinct distributions of peptides based on molecular weight and isoelectric point, dependent on enzyme specificity. In the combined hydrolysis model, 4 bitter peptides, 3 types of bitter amino acids, and 6 antioxidant peptides were identified.</p></sec><sec><title>Conclusion</title><p>Conclusion: Bioinformatic modeling enables the prediction of enzymatic changes in milk proteins during storage, their impact on quality, and enhances the efficiency of related experiments. These findings may support the development of approaches for assessing dairy product storage conditions and identifying quality markers.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>биоинформатика</kwd><kwd>молочные белки</kwd><kwd>пептидный профиль</kwd><kwd>хранение молочных продуктов</kwd><kwd>ферментативная порча</kwd></kwd-group><kwd-group xml:lang="en"><kwd>bioinformatics</kwd><kwd>milk proteins</kwd><kwd>peptide profile</kwd><kwd>storage of dairy products</kwd><kwd>enzymatic spoilage</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Barati, F., Hosseini, F., Vafaee, R., Sabouri, Z., Ghadam, P., Arab, S. S., Shadfar, N., &amp; Piroozmand, F. (2024). In silico approaches to investigate enzyme immobilization: A comprehensive systematic review. 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